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RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly differ
deseq2 RNA-Seq uniform distribution data visualization
updated 4.2 years ago by ★ 13k • written 4.2 years ago by ▴ 20
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how to construct mds plot of differentially expressed genes?
differentially expressed genes mds plot data visualization
5.1 years ago pratikshasharma47 • 0
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science data visualization machine learning cancer Job
6.1 years ago • updated 6.0 years ago Shamith.Samarajiwa ▴ 180
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Visualize FlowSet by Date
FlowSet data visualization cellcounts
6.9 years ago Maria • 0
0
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1
reply
623
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DNA Deferential metheylation
data visualization
7.4 years ago tarek_2050 • 0
1
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1
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2.0k
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Using pathview with uncommon species leads to Errors
pathview Kegg rnaseq data visualization
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by • 0
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1
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1.9k
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Pathview: visualization of data
pathview data visualization
updated 8.2 years ago by ★ 1.6k • written 8.2 years ago by ★ 4.0k
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1
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2.5k
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Input file of NGS data for Pathview
rnaseq pathview data visualization
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by ▴ 10
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Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
8.6 years ago Doe, Aimee ▴ 40
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
8.7 years ago • updated 8.6 years ago sunil.mangalam • 0
10 results • Page 1 of 1
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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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